Managed Payroll · Veterinary Practices

Managed Payroll for Veterinary Practices

Production-based associate pay, relief vet 1099s, and technician overtime -- all in one managed payroll. Veterinary practices run one of the most complex mixed compensation environments in healthcare, with a growing relief vet market, hourly technicians with overtime, and part-time front office staff all on the same payroll. We manage all of it at $25-$45 per employee per month.

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$25-$45Per employee per month, all-inclusive
All 50States covered, including multi-location practices
No migrationWorks in your existing system

The Payroll Reality for Vet Practices

Four compensation structures running simultaneously -- any one of them can break payroll.

Production pay
Associate vet compensation requires integrating production data into every pay cycle
Most associate vets earn a base salary plus a production percentage -- typically 18-25% of revenue they generate. Calculating it correctly requires pulling production figures from your practice management software, applying the right percentage, and reconciling adjustments every cycle.
Relief vet risk
Relief and emergency vets are commonly misclassified as independent contractors
The IRS and many states use a behavioral control test to determine whether a relief vet is truly an independent contractor or should be classified as a W-2 employee. Misclassification triggers back employment taxes, penalties, and benefits exposure for every relief vet you have paid as 1099.
Mixed workforce
Salaried vets, hourly techs, part-time CSRs, and 1099 relief vets on one payroll
Each employee category has different overtime rules, tax treatment, and documentation requirements. Running all four types correctly on a single payroll cycle is where most practice management software falls short and where compliance errors concentrate.

Who We Manage Payroll For

Every role in your practice, handled correctly

Associate veterinarians

Base salary plus production percentage, calculated from your practice management system. Bonus thresholds, drawback provisions, and annual true-ups handled.

Relief veterinarians

W-2 or 1099 processing based on your working relationship. We flag classification risk before it becomes an audit issue and handle year-end 1099-NEC filing for true contractors.

Veterinary technicians

Hourly pay with overtime calculations under FLSA. LVT versus unlicensed tech pay differentiation, shift differentials for overnight and emergency shifts.

Client service reps and front office

Part-time and full-time hourly staff, PTO accrual, and benefits eligibility tracking. ACA reporting for practices with 50+ FTE equivalent employees.

How It Works

Three steps to fully managed veterinary payroll

01
Scope review

We map your associate production pay structure, relief vet agreements, tech overtime rules, and front office roster. You get a fixed monthly cost before we start.

02
Payroll configuration

We configure production pay data pulls, relief vet classification review, overtime calculations, and multi-state registrations if applicable. No migration required -- we work in your existing system.

03
Ongoing managed service

Every pay cycle, every state filing, every production percentage calculation, every 1099-NEC -- fully managed by BEG. Your team approves, we execute.

What You Get

Three things most payroll vendors do not offer veterinary practices

Bonus 01No migration. We work in your existing system.

Common objection: "We do not want to disrupt our practice management or payroll software."

We do not require you to switch software. BEG operates as your managed payroll team inside your current system -- whether that is AviMark, Cornerstone, ezyVet, or a standalone payroll platform. If you want to move to isolved for a better experience, we can handle that transition, but it is never a requirement.

Bonus 02All-inclusive flat rate.

Common objection: "Payroll services charge extra for production pay integrations and 1099 processing."

The $25-$45 PEPM rate covers everything: production pay calculation, relief vet 1099 processing, multi-state filings, year-end W-2s, and BEG support. One number, every month.

Bonus 03A dedicated BEG contact who understands vet practice compensation.

Common objection: "Generic payroll support does not understand production pay or relief vet arrangements."

Your BEG payroll specialist is your ongoing point of contact. When your production percentage changes, when you add a relief vet, or when you open a second location -- one message to your BEG contact handles it. No call center, no ticket queue, no explaining your practice structure from scratch each time.

Getting Started

From scope review to live veterinary payroll in 3-5 business days

Day 1
Scope review call

15 minutes. We map your associate pay structure, relief vet arrangements, tech overtime, and multi-location setup -- and give you a fixed monthly price.

Days 1-2
Onboarding

Agreement signed, system access granted, staff roster and relief vet agreements reviewed.

Days 2-4
Configuration

Production pay integration, relief vet classification review, and overtime calculations configured in your existing system.

Day 5
First live payroll

Your first fully managed veterinary pay run -- BEG executes, your team approves. No migration required.

The Math on Waiting

A single relief vet reclassification audit costs more than years of managed payroll.

IRS reclassification of independent contractors to W-2 employees triggers back payroll taxes, both the employer and employee share, plus penalties and interest. For a practice that has paid five relief vets as 1099 over three years, the exposure can easily exceed $50,000. Fully managed payroll at $25-$45 PEPM on a 15-person practice costs under $9,000 per year -- including the protection.

Your Next Transition Window

The best time to fix production pay calculations is before your next associate dispute.

Payroll transitions take 30-60 days. Clean quarter-start cutovers require starting the scope review now. Every cycle you run production pay manually is a cycle where an error can create an associate compensation dispute -- one of the top reasons veterinary associate turnover happens.

15 minutes. We scope your production pay structure, relief vet situation, and staff roster -- and give you a fixed monthly cost.

FAQ

Common questions from veterinary practices

Can you handle production-based compensation for associate vets?

Yes. We integrate with your practice management system to pull production figures each pay cycle, apply the correct percentage, handle adjustments, and reconcile the calculation before payroll runs. Production pay errors are one of the most common associate retention issues -- we eliminate them.

How do you handle relief vet 1099 versus W-2 situations?

We review your relief vet agreements and working arrangements against IRS classification criteria. If a relief vet qualifies as a true independent contractor, we process 1099-NEC. If the arrangement carries W-2 risk, we flag it and walk you through the options before the next pay cycle.

What if we have multiple clinic locations?

We manage multi-location payroll as a single unified engagement. Employees who work across locations, state registrations for each location, and consolidated reporting are all included in the flat PEPM rate.

Do we have to change payroll systems?

No. BEG operates as your managed payroll team inside your existing system. Migration is an option if you want to upgrade, never a requirement to get started.

What does $25-$45 PEPM include?

Everything: payroll processing, production pay calculations, federal and state tax filing, 1099-NEC processing for relief vets, year-end W-2s, compliance updates, and dedicated BEG support.

How do you handle ACA compliance for growing veterinary practices?

Practices approaching 50 full-time equivalent employees become Applicable Large Employers under the ACA and must offer qualifying coverage or face penalties. We track your FTE count throughout the year and flag the threshold before you cross it, so you can make benefits decisions proactively rather than reactively at the end of the year.

What if we expand to a second clinic in a different state?

Multi-state practice expansion is part of what we manage. We register in the new state, handle separate withholding requirements, and incorporate the new location into your existing managed payroll engagement. You get consolidated billing and reporting across all locations at the same per-employee rate -- no new contracts, no additional setup fees.

How long does it take to transition to managed veterinary payroll?

From signed agreement to live payroll: 3-5 business days. We configure your production pay structure, review relief vet classifications, and set up everything in your existing system. The first payroll under BEG management runs the week after onboarding -- no disruption to your practice schedule or your staff.

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